2005 peer-reviewed publications
|
Name
|
Title
|
Journal
|
Vol.
|
Pages
|
|
Blagoev,
Krastan
|
BCS-BEC
Crossover with A Finite-Range Interaction
|
Phys.
Rev. B.
|
71
|
064513
|
|
Blagoev,
Krastan
|
Density
and Spin Response Functions in Ultracold Fermionic Atom Gases
|
Phys.
Rev. Lett.
|
95
|
090402
|
|
Blagoev,
Krastan
|
Models
of the Retina with Application to the Design of a Visual Prosthesis
|
Los
Alamos Science
|
1
|
29
|
|
Blagoev,
Krastan
|
Phases
of a Fermionic Model with Chiral Condensates and Cooper Pairs in 1+1
Dimensions
|
Physics
Review
|
D73
|
016005
|
|
Faeder,
James
|
Combinatorial
Complexity and Dynamical Restriction of Network Flows in Signal Transduction
|
IEE
Syst. Biol.
|
2
|
5-15
|
|
Faeder,
James
|
Graphical
Rule-Based Representation of Signal-Transduction Networks
|
Proc.
ACM Symp. Appl. Computing
|
1
|
133-140
|
|
Faeder,
James
|
On-The
Fly or Generate-First Modeling?
|
Nature
Biotechnology
|
23
|
1344-1345
|
|
Faeder,
James
|
Rule-Based
Modeling of Biochemical Networks
|
Complexity
|
10
|
22-41
|
|
Faeder,
James
|
Solvation
Dynamics in Reverse Micelles: The Role of Headgroup-Solute Interactions
|
J.
Phys. Chem. B
|
109
|
6732-6740
|
|
Gnanakaran,
Sandrasegaram
|
Helix-Coil
Transition of Alanine Peptides in Water: Force Field Dependence on the folded
and Unfolded Structures
|
Protein,
Structure, Function and Genetics
|
59
|
773-782
|
|
Gnanakaran,
Sandrasegaram
|
Simulations
of the Pressure and Temperature Unfolding of an Alphahelical Peptide
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
6765-6770
|
|
Goldstein,
Byron
|
Combinatorial
Complexity and Dynamical Restriction of Network Flows in Signal Transduction
|
Systems
Biology
|
2
|
5-15
|
|
Goldstein,
Byron
|
Effects
of pMHC and TCR Dwell Time on T Cell Activation
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
4824-4829
|
|
Goldstein,
Byron
|
T
Cell Activation: Kinetic Proofreading, Serial Engagement and Cell Adhesion
|
J.
Comp. Appl. Math.
|
184
|
121-139
|
|
Hlavacek,
William
|
Combinatorial
Complexity and Dynamical Restriction of Network Flows in Signal Transduction
|
Systems
Biology
|
2
|
5-15
|
|
Hlavacek,
William
|
Multiple
Functions of a Feed-Forward-Loop Gene Circuit
|
J.
Mol. Biol.
|
349
|
501-514
|
|
Hlavacek,
William
|
On-the-Fly
or Generate-First Modeling?
|
Nature
Biotechnology
|
23
|
1344-1345
|
|
Hlavacek,
William
|
Rule-Based
Modeling of Biochemical Networks
|
Complexity
|
10
|
22-41
|
|
Kuiken,
Carla
|
Ancient
Co-Speciation of Simian foamy Viruses and Primates
|
Nature
|
434
|
376-80
|
|
Kuiken,
Carla
|
HCV
NS5A La Pre-Treatment Sequence Variation and Viral Kinetics in African
Americans and Caucasians
|
J.
Infect. Dis.
|
192
|
1078-1087
|
|
Kuiken,
Carla
|
New
Research Tools: The Hepatitis C Databases in Los Alamos1
|
IHL
Press
|
1
|
437-453
|
|
Kuiken,
Carla
|
The
Los Alamos Hepatitis C Immunology Database
|
Appl.
Bioinformatics
|
4
|
217-25
|
|
Kuiken,
Carla
|
The
Nomenclature of HCV Genetic Variants: Creation of Unified System for
Assignment and Database Access
|
Hepatology
|
4
|
962-73
|
|
McMahon,
Benjamin
|
Conformational
Dependence of A Protein Kinase Phosphate Transfer Reaction
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
15347-15351
|
|
Perelson,
Alan
|
Analysis
of Human Immunodeficiency Virus Cytopathicity Using A New Method for
Quantitating Viral Dynamics in Cell Culture
|
J.
Virol
|
79
|
4025-4032
|
|
Perelson,
Alan
|
Duration
of an Intermittent Episode of Viremia
|
Bull.
of Math. Biol.
|
67
|
885-900
|
|
Perelson,
Alan
|
Estimating
Division and Death Rates from CSFE Data
|
J.
Comp. Appl. Math.
|
184
|
140-164
|
|
Perelson,
Alan
|
HCV
NS5A 1a Pre-Treatment Sequence Variation and Viral Kinetics in African
Americans and Caucasians
|
J.
Hepatology
|
192
|
1078-1087
|
|
Perelson,
Alan
|
High
Potency HIV Vaccination Leads to Delayed and Reduced CD8+ T Cell Expansion,
But Nevertheless Improved Viral Control
|
J.
Virol
|
79
|
10059-10062
|
|
Perelson,
Alan
|
HIV
Dynamics with Multiple Infections of Target Cells
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
8198-8203
|
|
Perelson,
Alan
|
Human
Immunodeficiency Virus: Quasispecies and Drug Resistance
|
Multiscale
Modeling and Simulation
|
3
|
300-311
|
|
Perelson,
Alan
|
Impact
of Thymectomy on the Peripheral T-Cell Pool in Rhesus Macaques Before and
After Infection with Simian Immunodeficiency Virus
|
Eur.
J. Immunolg.
|
35
|
46-55
|
|
Perelson,
Alan
|
Influence
of Drug Pharmacokinetics on HIV Pathogenesis and Therapy
|
World
Scientific
|
1
|
287-311
|
|
Perelson,
Alan
|
Mathematical
Modeling of Primary Hepatitis C Infection: Non-Cytolytic Clearance and Early
Blockage of Virion Production
|
Gastro-enterology
|
128
|
1056-1066
|
|
Perelson,
Alan
|
Modeling
Long-Term HIV Dynamics and Antiretroviral Response: Effects of Drug Potency,
Pharmacokinetics, Adherence, and Drug Resistance
|
J.
AIDS
|
39
|
272-283
|
|
Perelson,
Alan
|
Mutagenic
Effects of Ribavirin in Vivo
|
J.
Hepatology
|
43
|
553-555
|
|
Perelson,
Alan
|
New
Kinetic Models for the Hepatitis C Virus
|
Hepatology
|
42
|
749-754
|
|
Perelson,
Alan
|
Opportunistic
Infection as a Cause of Transient Viremia in Chronically Infected HIV
Patients Under Treatment with HAART
|
Bull.
of Math. Biol.
|
67
|
1227-1251
|
|
Perelson,
Alan
|
Optimization
of Influenza Vaccine Selection
|
Operations
Research
|
53
|
456-476
|
|
Perelson,
Alan
|
The
Effects of Thymic Selection on the Range of T Cell Cross-Reactivity
|
Eur.
J. Immunolg.
|
35
|
3452-3459
|
|
Redondo,
Antonio
|
Coarse-Grained
Rigid Blob Model for Soft Matter Simulations
|
J.
Chem. Phys.
|
122
|
234912
|
|
Ribeiro,
Ruy
|
HCV
NS5A 1a Pretreatment Sequence Variation and Viral Kinetics in African
Americans and Caucasians
|
J.
Infect. Dis.
|
192
|
1078-1087
|
|
Ribeiro,
Ruy
|
High
Potency HIV Vaccination Leads to Delayed and Reduced CD8+T cell Expansion,
But Nevertheless Improved Viral Control
|
J.
Virol
|
79
|
10059-10062
|
|
Ribeiro,
Ruy
|
Impact
of Thymectomy on the Peripheral T-Cell Pool in Rhesus Macaque Before and
After Infection with Simian Immunodeficiency Virus
|
Eur.
J. Immunolg.
|
35
|
46-55
|
|
Ribeiro,
Ruy
|
Mutagenic
Effects of Ribavirin in Vivo
|
J.
Hepatology
|
43
|
553-555
|
|
Ribeiro,
Ruy
|
Naive
and Memory Cell Turnover as Drivers of CCR5 to CXCR4-Tropism Switch in HIV-1:
Implications for Therapy
|
J.
Virol
|
80
|
802-809
|
|
Sanbonmatsu,
Kevin
|
Simulating
Movement of tRNA into the Ribosome During Decoding
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
15854-15859
|
|
Stajic,
Jelena
|
BCS-BEC
Crossover: From high Temperature Superconductors to Ultracold Superfluids
|
Physics
Reports
|
412
|
1
|
|
Stajic,
Jelena
|
Density
Profiles of Strongly Interacting Trapped Fermi Gases
|
Phys.
Rev. Lett.
|
94
|
060401
|
|
Stajic,
Jelena
|
Hamiltonian
Walks on Sierpinski and N-Simplex Fractals
|
J.
Phys. A: Math. Gen.
|
38
|
5677
|
|
Stajic,
Jelena
|
Heat
Capacity of a Strongly-Interacting Fermi Gas
|
Science
|
307
|
1296
|
|
Stajic,
Jelena
|
Particle
Density Distributions in Fermi Gas Superfluids: Difference Between One-and
Two-Channel Models
|
Phys.
Rev. A.
|
71
|
033601
|
|
Tung,
Chang-Shung
|
Conformational
variability in the Camp-Dependent Protein Kinase Phosphory1 Transfer Reaction
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
15347-15351
|
|
Tung,
Chang-Shung
|
Simulating
Movement of Cognate tRNA into Ribosome
|
Proc. Ntl. Academy of Sciences (USA)
|
102
|
15854-15859
|
